FastQCFastQC Report
Wed 8 May 2024
EGAF00007961153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498006
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29990.6022015799006438No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21560.43292651092557116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10870.2182704626048682No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA8670.17409428802062626No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8550.17168467849784944No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8460.1698774713557668No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.1381509459725385No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6270.12590209756508958No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.11084203804773436No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.10642442058931016No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5170.1038140102729686No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5090.10220760392445072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)