FastQCFastQC Report
Wed 8 May 2024
EGAF00007961154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477464
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9740.20399443727694652No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9010.1887053264748756No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8460.17718613340482214No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8440.1767672536568202No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7820.16378198146875994No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6140.1285960826365967No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5820.12189400666856559No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5250.1099559338505102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)