FastQCFastQC Report
Wed 8 May 2024
EGAF00007961155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477464
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57011.1940167216795403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21390.4479918904880787No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9950.20839267463096692No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA8630.18074661126283867No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8010.16776133907477842No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7220.15121558902870164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.13278488011661613No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6250.1308999212506074No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5310.11121257309451603No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5100.10681433574049562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)