FastQCFastQC Report
Wed 8 May 2024
EGAF00007961157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470989
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27660.5872748620456104No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17610.3738940824520318No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10260.21783948245075788No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6490.1377951502052065No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5270.11189220979683177No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5000.1061595918376013No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4710.10000233551102043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)