FastQCFastQC Report
Wed 8 May 2024
EGAF00007961159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446909
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56011.253275275279755No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17390.3891172475828412No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10240.2291294200832832No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6160.13783566676885003No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4990.11165584045074053No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4580.1024817132794372No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4490.10046788048573647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)