FastQCFastQC Report
Wed 8 May 2024
EGAF00007961161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472411
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27730.5869888719780022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18270.38673951283945546No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10090.21358520440887277No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6270.1327234124522926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5240.11092036383572779No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5210.11028532358475988No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4840.10245316048948902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)