FastQCFastQC Report
Wed 8 May 2024
EGAF00007961163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453329
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52431.1565551729538592No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18300.40368032929726533No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10520.232061041759958No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6420.14161900076986028No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4910.10830985884423894No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4850.10698631678096923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)