FastQCFastQC Report
Wed 8 May 2024
EGAF00007961165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476512
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28650.6012440400241756No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15490.32507051239003426No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13420.28162984352964876No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9490.1991555301860184No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9290.1949583641125512No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9160.19223020616479752No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8000.1678866429386878No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7210.15130783694849237No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7000.14690081257135182No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6910.1450120878382916No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6010.1261248405076892No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5750.12066852461218186No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5580.11710093344973474No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5480.11500235041300114No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5100.10702773487341348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)