FastQCFastQC Report
Wed 8 May 2024
EGAF00007961167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451400
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57121.2653965440850687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15410.3413823659725299No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.2913159060700044No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8970.19871510855117414No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8920.19760744350908283No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8680.19229065130704476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7470.16548515728843596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6780.1501993797075764No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6370.141116526362428No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6240.13823659725299067No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5800.1284891448825875No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.11807709348692955No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5290.11719096145325653No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5210.11541869738591051No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4720.10456357997341605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)