FastQCFastQC Report
Wed 8 May 2024
EGAF00007961169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479454
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26590.5545891785239043No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15650.3264129614102709No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13080.27281032174098035No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9600.2002277590759489No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9190.19167636519874692No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9150.19084208286926377No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8670.18083069491546636No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7130.14871082523036622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6860.14307941950635514No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6820.14224513717687204No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5800.12097093777505247No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5690.11867666136897387No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.11763380845711997No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5190.10824813225043486No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4960.10345100885590694No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4910.10240815594405302No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4880.10178244419694069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)