FastQCFastQC Report
Wed 8 May 2024
EGAF00007961175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460230
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58371.2682789040262477No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13960.30332659757077984No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13490.2931143124090129No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12980.28203289659518066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12920.2807292006170828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10920.2372726680138192No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9700.2107641831258284No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9510.20663581252851837No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8960.19468526606262088No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8880.19294700475849033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8490.18447298090085393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7630.16578667188145058No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7580.164700258566369No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7060.15340156008952047No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6970.1514460161223736No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6480.14079916563457404No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6470.1405818829715577No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5050.10972774482324056No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG4940.10733763553006105No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4900.10646850487799578No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4800.1042956782478326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)