FastQCFastQC Report
Wed 8 May 2024
EGAF00007961180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495540
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10100.20381805706905595No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7850.15841304435565243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7070.14267263994833917No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6840.1380312386487468No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6410.12935383621907415No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6010.12128183395891351No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5720.11542963232029704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)