FastQCFastQC Report
Wed 8 May 2024
EGAF00007961181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495540
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29440.5940993663478226No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13020.2627436735682286No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9380.18928845300076685No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8400.16951204746337328No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7760.15659684384711628No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7540.15215724260402794No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7090.14307624006134723No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.12693223554102595No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6100.12309803446744964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)