FastQCFastQC Report
Wed 8 May 2024
EGAF00007961183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468701
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57581.2285017527165507No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11740.25047951679215535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8910.19009987177326268No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7670.1636437728957267No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7570.1615102165346351No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6970.1487088783680854No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.1476421001875396No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.11371855404618296No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5270.11243842022952799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)