FastQCFastQC Report
Wed 8 May 2024
EGAF00007961184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496526
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9670.19475314485042072No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7080.14259072032481682No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6870.13836133455247057No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6580.13252075420018286No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6330.1274857711378659No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5690.11459621449833443No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5400.10875563414604672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)