FastQCFastQC Report
Wed 8 May 2024
EGAF00007961185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496526
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27980.5635153043345162No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12160.2449015761510978No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.1875027692406843No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7700.15507747831936292No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7590.15286208577194346No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7440.14984109593455328No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7020.14138232438986076No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6000.12083959349560747No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5960.12003399620563676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)