FastQCFastQC Report
Wed 8 May 2024
EGAF00007961187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476537
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55921.1734660687417766No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12520.26272881224333056No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10030.2104768360064381No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7950.1668285988286324No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7570.1588544016519179No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7180.15067035718107932No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6830.14332570188673702No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6190.1298954750627968No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5850.12276066706257856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)