FastQCFastQC Report
Wed 8 May 2024
EGAF00007961188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462651
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9160.19798941318618138No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8120.17551026583753196No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7380.15951548791637757No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6120.13228113632089847No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6000.12968738854990047No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5790.12514832995065395No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5400.11671864969491043No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5260.11369261062874607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)