FastQCFastQC Report
Wed 8 May 2024
EGAF00007961189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462651
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28120.6078015610038668No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18050.39014289388761725No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10610.22933053208574064No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7540.16297381827770824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7490.1618930900397924No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6790.1467628947089707No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6510.140710816576642No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6140.1327134276160648No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5670.12255458217965594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)