FastQCFastQC Report
Wed 8 May 2024
EGAF00007961191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436110
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55211.265965008828048No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16770.38453601155671735No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9630.22081584921235467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7820.17931255875811147No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6910.15844626355735938No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6270.1437710669326546No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6090.1396436678819564No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5530.1268028708353397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5510.12634427094081768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)