FastQCFastQC Report
Wed 8 May 2024
EGAF00007961192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466089
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9660.20725655400578002No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8320.1785066800546677No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7540.16177167879954257No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6830.1465385366314159No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6280.13473821523357127No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5820.12486885551901032No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5800.12443975292272505No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5300.11371218801559359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)