FastQCFastQC Report
Wed 8 May 2024
EGAF00007961193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466089
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26490.5683463887798254No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18940.40636015868214015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10940.2347191201680366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8420.18065219303609398No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7540.16177167879954257No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.15276052427755216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6980.14975680610355532No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.13473821523357127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5830.12508340681715296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)