FastQCFastQC Report
Wed 8 May 2024
EGAF00007961194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445086
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8410.18895224743083358No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7650.17187689570105552No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7010.15749765213913716No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6000.13480540839298472No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5520.12402097572154595No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5400.12132486755368624No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5290.11885343506648154No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5110.114809272814692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)