FastQCFastQC Report
Wed 8 May 2024
EGAF00007961195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445086
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54461.2235837568469914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16720.37565773805511743No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10210.22939386994872904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7670.1723262470623655No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7300.16401324687813143No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6420.14424178698049364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.13547943543494964No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5520.12402097572154595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5280.11862875938582655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)