FastQCFastQC Report
Wed 8 May 2024
EGAF00007961197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460924
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27290.5920715779607918No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22400.4859803351528668No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14950.3243484826131857No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14450.31350070727495205No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11900.2581770530499605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8860.1922225789935No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8730.18940215740555927No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8140.17660178250644357No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7980.17313049439820882No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7240.15707578689762303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7220.1566418758840937No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6420.13928543534291987No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6260.1358141472346851No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6080.131908948112921No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5780.12540028290998081No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5770.12518332740321614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.11108121946351243No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4920.10674210932821897No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4810.10435559875380757No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4800.10413864324704289No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4750.10305386571321953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)