FastQCFastQC Report
Wed 8 May 2024
EGAF00007961199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436561
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55191.2641990466395303No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21170.4849265051161235No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14260.3266439283399113No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13360.30602825263823386No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11400.26113189222124744No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8080.1850829551883929No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7880.18050169392135348No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7650.17523324346425814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7620.17454605427420222No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.15438850469922874No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6330.1449969191017979No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6280.14385160378503806No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6100.13972846864470256No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5490.12575562178023234No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5440.12461030646347246No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5240.12002904519643302No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4690.10743057671207461No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4670.10697245058537065No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4530.10376556769844306No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4460.10216212625497925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4380.10032962174816348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)