FastQCFastQC Report
Wed 8 May 2024
EGAF00007961201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465513
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27360.5877386882858265No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22950.4930044918187032No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15300.3286696612124688No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14410.3095509685014167No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11400.24489112011909445No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9180.1972017967274813No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9030.1939795451469669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.1834535233172865No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8080.17357195180370905No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7620.16369038029013155No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7030.15101619074010822No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6480.1392012682782221No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6220.13361603220533047No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6080.13060859739685035No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5910.12695671227226737No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5600.12029739233920426No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5550.11922330847903281No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5090.10934173696545532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4990.10719356924511238No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4950.1063343021569752No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4700.10096388285611786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)