FastQCFastQC Report
Wed 8 May 2024
EGAF00007961203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445130
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52641.1825758767101746No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21970.4935636780266439No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14630.3286680295643969No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13160.29564396917754365No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11270.25318446296587516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8360.18781030260822681No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8160.1833172331678386No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8020.18017208455956688No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7820.17567901511917866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6750.1516410936131018No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6290.14130703390020893No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6220.13973445959607306No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6190.1390604991800148No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5700.12805247905106373No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5540.12445802349875318No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5390.12108822141846202No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5100.11457327072989913No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4800.10783366656931684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4730.10626109226518096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)