FastQCFastQC Report
Wed 8 May 2024
EGAF00007961204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509275
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10320.20264100927789505No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9080.17829267095380688No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8200.16101320504638947No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7810.1533552599283295No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6020.11820725541210546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6020.11820725541210546No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5240.10289136517598546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)