FastQCFastQC Report
Wed 8 May 2024
EGAF00007961205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509275
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30000.5890727013892298No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21030.4129399636738501No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10610.2083353787246576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10480.20578273035197092No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6590.1293996367385008No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.12311619459034902No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5810.11408374650238083No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5410.1062294438171911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)