FastQCFastQC Report
Wed 8 May 2024
EGAF00007961206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481742
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9820.2038435511124212No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9200.1909735916735514No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8010.16627157275055943No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7420.1540243532845382No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5700.11832059484122207No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5570.11562205495887841No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5270.10939465523039305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)