FastQCFastQC Report
Wed 8 May 2024
EGAF00007961207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481742
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60241.2504618654798627No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20800.4317663811749858No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10110.20986337084995701No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9760.2025980711667241No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6100.12662379447920255No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5950.12351009461495988No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.1208115547326162No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4940.10254451552905912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)