FastQCFastQC Report
Wed 8 May 2024
EGAF00007961208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510067
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11720.22977373560728298No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8840.1733105650826264No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8060.15801845639886525No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7550.14801976995179064No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5650.11076976161955195No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5580.1093973928915221No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5380.1054763393828654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)