FastQCFastQC Report
Wed 8 May 2024
EGAF00007961209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510067
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30070.5895303950265357No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21130.414259303189581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11740.23016584095814863No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10480.2054632038536114No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6100.11959213201402953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6060.11880792131229818No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5910.11586713118080566No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5260.10312370727767137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)