FastQCFastQC Report
Wed 8 May 2024
EGAF00007961210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490099
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10220.20852929714200602No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9640.19669495346858493No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7950.16221212448913383No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7400.15098990204020005No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5850.119363638775023No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5840.11915959836686058No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5290.10793737591792679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)