FastQCFastQC Report
Wed 8 May 2024
EGAF00007961211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490099
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60141.227099014688869No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21720.44317576652880336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.21036566081546793No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9680.19751111510123465No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6130.1250767702035711No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6100.12446464897908381No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5940.1212000024484849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)