FastQCFastQC Report
Wed 8 May 2024
EGAF00007961213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483864
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30100.6220756245556602No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17810.36807863366565813No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13430.2775573301588876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11680.24139014268472134No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11010.22754327662318335No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9440.19509614271778847No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9040.1868293570094076No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8470.17504918737496486No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8380.17318916059057915No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7780.16078898202800787No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6850.14156870525602233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6500.1343352677611891No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6040.12482846419655111No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5440.1124282856339798No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5290.10932824099333698No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5060.10457483921101798No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5000.10333482135476083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)