FastQCFastQC Report
Wed 8 May 2024
EGAF00007961215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458741
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59971.3072736031878556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16820.36665569460763264No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11990.26136752546643965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11610.2530839842089545No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10170.2216937226016423No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8960.1953171833343869No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7930.1728644267680456No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7880.1717744871289028No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7800.17003058370627433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7480.16305497001576053No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6560.1430000806555333No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5620.12250921543964896No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5330.1161875655326208No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4950.10790402427513564No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4900.10681408463599285No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4810.10485219328553584No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4610.1004924347289647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)