FastQCFastQC Report
Wed 8 May 2024
EGAF00007961217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486576
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29690.6101821709249942No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17360.3567787971457696No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13750.2825868929005952No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11980.24621025286902767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11260.23141297556805102No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10040.2063398112525073No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8560.1759231856893887No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8410.17284041958501856No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8000.16441419223307358No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7280.14961691493209694No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6610.13584722633257704No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6350.13050376508500214No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5690.11693959422577357No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.11611752326460821No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5360.11015750879615929No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5190.10666370721120647No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4960.10193679918450561No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4910.10090921048304889No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4890.10049817500246622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)