FastQCFastQC Report
Wed 8 May 2024
EGAF00007961219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465909
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57591.2360782899664957No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16650.3573659233884729No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12920.27730737118192605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11340.2433951694429599No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10300.22107321386794415No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8950.19209759845806798No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8420.18072198648233884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7720.16569759330684747No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7530.16161954373064266No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7030.15088783431957742No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6650.14273173516716783No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6210.13328783088543042No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5320.11418538813373427No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5250.11268294881618514No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5150.11053660693397208No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5050.10839026505175904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4740.10173660521689858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)