FastQCFastQC Report
Wed 8 May 2024
EGAF00007961220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442405
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19860.4489099354663713No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15270.34515884766220994No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13520.3056023327041964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13410.3031159231925498No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13370.3022117742792238No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11340.25632621692792806No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8620.19484409082175835No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7930.1792475220668844No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7510.16975395847696115No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7370.16658943728032005No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7290.164781139453668No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6830.15438342695041873No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6780.15325324080876118No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6520.14737627287214206No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6130.13856082096721328No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5960.1347181880855777No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5870.13268385303059413No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5830.1317797041172681No Hit
CATCGCTTCGATGGTCAGACCGTTGATAGAGTAGTTGTTAGAGT5400.12206010329901334No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5360.12115595438568733No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5330.1204778427006928No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5170.11686124704738872No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5090.11505294922073667No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5000.1130186141657531No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4830.10917598128411748No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4470.10103864106418327No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4430.10013449215085725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)