FastQCFastQC Report
Wed 8 May 2024
EGAF00007961221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442405
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28040.6338083882415434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19990.4518484194346809No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17900.40460663871339614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15810.35736485799211126No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14630.3306924650489935No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13930.3148698590657881No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13840.31283552401080456No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13340.30153366259422926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9430.21315310631661033No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9190.20772821283665419No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8610.19461805359342685No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8590.1941659791367638No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7590.17156225630361321No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7160.16184265548535845No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6970.15754794814705983No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6890.15573965032040776No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6870.15528757586374475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6690.15121890575377767No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6530.14760231010047356No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6020.13607441145556673No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5460.12341632666900239No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5400.12206010329901334No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5350.12092991715735582No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5320.1202518054723613No Hit
GCTGATCGTCAGGCAAAAGCTAAAGCACTGC5320.1202518054723613No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.11460087476407364No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4830.10917598128411748No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4770.10781975791412846No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4670.10555938563081338No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4590.10375108780416135No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4520.1021688272058408No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4460.10081260383585175No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA4460.10081260383585175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)