FastQCFastQC Report
Wed 8 May 2024
EGAF00007961222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419026
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18550.4426932934949144No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13730.3276646317889582No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12780.3049930075938009No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11770.28088949134421254No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11570.2761165178294426No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11310.2699116522602416No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8710.20786299656823204No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7160.17087245182876482No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7000.16705407301694883No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6960.16609947831399482No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6610.1577467746631474No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6610.1577467746631474No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6230.14867812498508445No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6060.14462109749752997No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5940.141757313388668No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5590.13340460973782056No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5570.1329273123863436No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5470.13054082562895858No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5390.1286316362230506No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5030.12004028389646466No Hit
CATCGCTTCGATGGTCAGACCGTTGATAGAGTAGTTGTTAGAGT4910.11717649978760268No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4700.1121648775970942No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4570.10906244481249375No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4440.10596001202789326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)