FastQCFastQC Report
Wed 8 May 2024
EGAF00007961223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419026
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53801.283929875473121No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18580.4434092395221299No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15730.37539436693665784No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14180.3384038221971906No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13870.3310057132492972No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13400.31978922548958777No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12160.29019678969801393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12050.2875716542648905No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9430.2250457012214039No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8650.20643110451380106No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7740.1847140750215977No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7420.17707731739796576No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7380.17612272269501178No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7210.1720656952074573No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6800.16228109950217887No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6490.1548829905542854No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6380.1522578551211619No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6060.14462109749752997No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6060.14462109749752997No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5590.13340460973782056No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5280.12600650078992712No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5170.12338136535680364No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5090.12147217595089566No Hit
GCTGATCGTCAGGCAAAAGCTAAAGCACTGC4880.11646055376038718No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4750.11335812097578671No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4570.10906244481249375No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4490.10715325540658574No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4360.10405082262198526No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4350.10381217394624677No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4320.10309622791903128No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4200.1002324438101693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)