FastQCFastQC Report
Wed 8 May 2024
EGAF00007961224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441742
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20730.4692784476006357No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14780.3345844406916254No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13710.31036215709622356No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13390.30311810966582303No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12500.2829706027500215No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11810.2673506254782203No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9320.21098288141041602No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7470.16910323220341286No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7440.1684241027568128No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7440.1684241027568128No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7440.1684241027568128No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7160.1620855612552123No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6830.15461513734261176No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6810.1541623843782117No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6420.14533370157241104No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5960.13492038339121026No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5930.1342412539446102No Hit
CATCGCTTCGATGGTCAGACCGTTGATAGAGTAGTTGTTAGAGT5890.13333574801581013No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5770.13061923022940994No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5640.12767633596080968No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5210.11794214722620897No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5040.11409374702880867No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4970.11250911165340854No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4600.10413318181200792No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4550.10300129940100783No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4530.1025485464366078No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4460.10096391106120767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)