FastQCFastQC Report
Wed 8 May 2024
EGAF00007961225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441742
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27120.6139330197264466No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20750.4697312005650357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18410.4167591037302317No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15090.34160211163982596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14520.32869865215442495No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13950.315795192669024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12920.2924784150024222No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12610.28546074405422167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10400.2354315414880179No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9300.21053012844601598No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8510.19264638635221465No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8160.18472320947521403No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8150.18449683299301403No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7370.16683946738141267No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7090.16050092587981218No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6840.15484151382481176No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6660.15076673714521147No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6650.15054036066301144No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6640.15031398418081143No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5960.13492038339121026No Hit
GCTGATCGTCAGGCAAAAGCTAAAGCACTGC5790.13107198319380997No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5580.1263180770676096No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5450.12337518279900937No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5350.1211114179770092No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5170.11703664129740889No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5130.11613113536860882No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5070.11477287647540874No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4880.11047172331360838No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4880.11047172331360838No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4720.10684969959840812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)