FastQCFastQC Report
Wed 8 May 2024
EGAF00007961226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424168
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18830.4439278776333906No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14720.3470323079534524No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12860.3031817581712906No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12510.29493031063163655No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12250.2888006638878935No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11650.2746553252484864No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8930.2105297900831746No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8020.18907602648007393No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7330.17280888704475583No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7130.16809377416495352No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6980.16455743950510174No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6580.15512721374549707No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6540.1541841911695366No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6520.15371267988155635No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6250.1473472774938232No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5790.1365025178702778No Hit
CATCGCTTCGATGGTCAGACCGTTGATAGAGTAGTTGTTAGAGT5300.12495049131476207No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5210.12282869051885102No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5120.12070688972293997No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5110.12047113407894984No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5000.11787782199505856No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4930.11622753248712774No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4570.10774032930348354No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4510.10632579543954283No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4490.10585428415156259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)