FastQCFastQC Report
Wed 8 May 2024
EGAF00007961228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477056
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG23880.5005701636705124No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18860.3953414274215187No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17580.36851019586799033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15710.3293114435202576No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14620.30646297290045615No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13270.27816440837134426No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13070.2739720284411054No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12780.2678930775422592No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10650.22324423128521598No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10480.219680708344513No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9590.20102461765495036No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9550.20018614166890258No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC9320.195364904749128No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8730.18299738395492354No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG8690.18215890796887577No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8630.18090119398980412No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7850.16455091226187282No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG7680.16098738932116982No Hit
TTTGAAACGCTGCATCTGCACGCCCATACGTTTCTGGTATGCCT7260.15218339146766835No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6920.1450563455862624No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6580.13792929970485646No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG6380.13373691977461766No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6170.1293349208478669No Hit
CAGCAGGCCATCGACGGCCGCGGTCGCTGCATCCTGCAGGGTGC5440.11403273410249531No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5310.11130768714784009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)