FastQCFastQC Report
Wed 8 May 2024
EGAF00007961229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477056
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39840.8351220821035685No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33510.7024332573115106No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29600.6204722296753421No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG23380.49008921384491544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18240.3823450496377784No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17510.3670428628924068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17190.3603350550040247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15650.32805372954118595No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11430.2395945130131473No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10700.2242923262677757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10510.22030956533404886No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9810.20563623557821303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9270.1943168097665683No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG9160.19201100080493694No Hit
GCAGAAGCGATGGAAGTGGCGAACAAAACCC9010.18886671585725787No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC7790.1632931982828012No Hit
GCAGCCGAAGCGATGGAAGTCGCTTCCCAGG7420.1555372954118594No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7190.15071605849208478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7030.14736215454789375No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC6610.13855815669439225No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6400.13415615776764153No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6240.1308022538234505No Hit
TCTACCCCGGCCAGCACTGGTGGTGTTGGTC5330.11172692514086398No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5010.10501911725248189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)