FastQCFastQC Report
Wed 8 May 2024
EGAF00007961230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452533
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG21790.48151184554496584No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17590.3887009345174827No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15920.35179754846607875No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15130.3343402580585283No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13530.29898372052424904No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12430.27467610096943207No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12370.2733502308118966No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12020.26561598822627297No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10060.22230422974678088No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9760.21567487895910353No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9320.20595183113717674No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC9000.19888052363032088No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8570.18937845416798332No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8420.18606377877414465No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7830.17302605555837916No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG7810.17258409883920067No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7560.16705963984946953No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG7480.16529181297275558No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7080.15645267858918577No Hit
TTTGAAACGCTGCATCTGCACGCCCATACGTTTCTGGTATGCCT6610.14606669568849123No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5890.13015625379806556No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5890.13015625379806556No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG5830.1288303836405301No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5250.11601363878435385No Hit
CAGCAGGCCATCGACGGCCGCGGTCGCTGCATCCTGCAGGGTGC4620.1020920021302314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)